Package: grover 1.1.3

Jasen Finch

grover: Web API Framework for Mass Spectrometry Data Transfer

A web based API framework for hosting and interfacing a mass spectrometry raw data data repository. Transfer files, retrieve file information, convert raw mass spectromery data to .mzML format and retrieve sample information from .raw file headers.

Authors:Jasen Finch [aut, cre]

grover_1.1.3.tar.gz
grover_1.1.3.zip(r-4.7)grover_1.1.3.zip(r-4.6)grover_1.1.3.zip(r-4.5)
grover_1.1.3.tgz(r-4.6-any)grover_1.1.3.tgz(r-4.5-any)
grover_1.1.3.tar.gz(r-4.7-any)grover_1.1.3.tar.gz(r-4.6-any)
grover_1.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
grover/json (API)
NEWS

# Install 'grover' in R:
install.packages('grover', repos = c('https://aberhrml.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jasenfinch/grover/issues

Pkgdown/docs site:https://jasenfinch.github.io

On CRAN:

Conda:

massspectrometrymetabolomics

1.70 score 6 scripts 35 exports 61 dependencies

Last updated from:53ea67ed20. Checks:8 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR160
source / vignettesERROR207
linux-release-x86_64ERROR166
macos-release-arm64ERROR90
macos-oldrel-arm64ERROR102
windows-develERROR160
windows-releaseERROR164
windows-oldrelERROR138
wasm-releaseOK131

Exports:authauth<-conversionArgsMSlevel1conversionArgsMSlevel2conversionArgsMSlevel3conversionArgsNegativeModeconversionArgsPeakPickconversionArgsPositiveModeconvertDirectoryconvertDirectorySplitModesconvertFiledirectoryFileInfoextantfileInfogrovergroverAPIhosthost<-instrumentFileInfolistDirectorieslistFileslistInstrumentslistRawFilesportport<-readGroverrepositoryrepository<-repositoryFileInforunInfosampleInfoshowtransferDirectorytransferFileversion

Dependencies:askpassbitbit64callrclicliprclisymbolscpp11crayoncurldplyrfastmapfsgenericsgluehmshttpuvhttrjsonlitelaterlifecycleloggermagrittrmimemsconverteRopensslotelpillarpkgconfigplumberprettyunitsprocessxprogresspromisespspurrrR.methodsS3R.ooR.utilsR6rawrrRcppreadrrjsonrlangsodiumstevedorestringistringrswaggersystibbletictoctidyselecttzdbutf8vctrsvroomwebutilswithryaml

Readme and manuals

Help Manual

Help pageTopics
Conversion argumentsconversionArgsMSlevel1 conversionArgsMSlevel2 conversionArgsMSlevel3 conversionArgsNegativeMode conversionArgsPeakPick conversionArgsPositiveMode
Convert raw files to mzML formatconvertDirectory convertDirectory,GroverClient-method convertDirectorySplitModes convertDirectorySplitModes,GroverClient-method convertFile convertFile,GroverClient-method
Check the existance of a grover APIextant extant,GroverClient-method
Retrieve file informationdirectoryFileInfo directoryFileInfo,GroverClient-method fileInfo fileInfo,GroverClient-method instrumentFileInfo instrumentFileInfo,GroverClient-method repositoryFileInfo repositoryFileInfo,GroverClient-method
GroverClient and GroverHost class constructorgrover
Grover APIgroverAPI
GroverClient classGroverClient-class
GroverHost classGroverHost-class
GroverClient get and set methodsauth auth,GroverClient-method auth<- auth<-,GroverClient-method host host,GroverClient-method host<- host<-,GroverClient-method port port,GroverClient-method port<- port<-,GroverClient-method
List raw data repository contentslistDirectories listDirectories,GroverClient-method listFiles listFiles,GroverClient-method listInstruments listInstruments,GroverClient-method listRawFiles listRawFiles,GroverClient-method
Parse a grover configuration filereadGrover
GroverHost get and set methodsrepository repository,GroverHost-method repository<- repository<-,GroverHost-method
Retrieve sample raw file header informationrunInfo runInfo,GroverClient-method sampleInfo sampleInfo,GroverClient-method
Grover class show methodsshow,GroverClient-method show,GroverHost-method
Transfer filestransferDirectory transferDirectory,GroverClient-method transferFile transferFile,GroverClient-method
Return the version of a grover APIversion version,GroverClient-method