Package: metaboData 0.6.4

Jasen Finch

metaboData: Example Metabolomics Data Sets

Data sets from a variety of biological sample matrices, analysed using a number of mass spectrometry based metabolomic analytical techniques. The example data sets are stored remotely using GitHub releases <https://github.com/aberHRML/metaboData/releases> which can be accessed from R using the package. The package also includes the 'abr1' FIE-MS data set from the 'FIEmspro' package <https://github.com/aberHRML/FIEmspro> <doi:10.1038/nprot.2007.511>.

Authors:Jasen Finch [aut, cre], Manfred Beckmann [ctb], David Enot [ctb], Wanchang Lin [ctb]

metaboData_0.6.4.tar.gz
metaboData_0.6.4.zip(r-4.7-any)metaboData_0.6.4.zip(r-4.6-any)metaboData_0.6.4.zip(r-4.5-any)
metaboData_0.6.4.tgz(r-4.6-any)metaboData_0.6.4.tgz(r-4.5-any)
metaboData_0.6.4.tar.gz(r-4.7-any)metaboData_0.6.4.tar.gz(r-4.6-any)
metaboData_0.6.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
metaboData/json (API)

# Install 'metaboData' in R:

install.packages('metaboData', repos = c('https://aberhrml.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/aberhrml/metabodata/issues

Pkgdown/docs site:https://aberhrml.github.io

Datasets:

abr1 - The abr1 dataset

On CRAN:

data datasets fie-hrms fie-ms mass-spectrometry metabolomics

5.00 score 2 stars 101 scripts 433 downloads 10 exports 47 dependencies

Last updated from:88a4a7a951. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	176
source / vignettes	OK	193
linux-release	OK	175
macos-release	OK	176
macos-oldrel	OK	180
windows-devel	OK	76
windows-release	OK	86
windows-oldrel	OK	61
wasm-release	OK	128

Exports:%>%availableDataSets availableFiles dataSets description downloadDataSet downloadFiles filePaths runinfo techniques

Dependencies:askpass bit bit64 cachem cli clipr cpp11 crayon curl dplyr fastmap fs generics gitcreds glue hms httr httr2 ini jsonlite lifecycle lubridate magrittr memoise mime openssl piggyback pillar pkgconfig prettyunits progress purrr R6 readr rlang stringi stringr sys tibble tidyselect timechange tzdb utf8 vctrs vroom withr yaml

metaboData

Accessing data sets

Rendered frommetaboData.Rmdusingknitr::rmarkdown

Last update: 2021-08-13
Started: 2020-12-05

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
The abr1 dataset	abr1 FIEmspro
Available data sets	availableDataSets
Available files for a data set	availableFiles
Available data sets for a given technique	dataSets
Data set description	description
Download a data set	downloadDataSet
Download specific files from a data set	downloadFiles
Data set file paths	filePaths
Data set sample information	runinfo
Available data set techniques	techniques