Introduction | Installation | Querying the Repository | Download File Contents
Package: metabolighteR 0.1.6
Tom Wilson
metabolighteR: Interface to the 'Metabolights' REST API
Access to the 'Metabolights' REST API <https://www.ebi.ac.uk/metabolights/index>. Retrieve elements of publicly available 'Metabolights' studies.
Authors:
metabolighteR_0.1.6.tar.gz
metabolighteR_0.1.6.zip(r-4.7)metabolighteR_0.1.6.zip(r-4.6)metabolighteR_0.1.6.zip(r-4.5)
metabolighteR_0.1.6.tgz(r-4.6-any)metabolighteR_0.1.6.tgz(r-4.5-any)
metabolighteR_0.1.6.tar.gz(r-4.7-any)metabolighteR_0.1.6.tar.gz(r-4.6-any)
metabolighteR_0.1.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
metabolighteR/json (API)
| # Install 'metabolighteR' in R: |
| install.packages('metabolighteR', repos = c('https://aberhrml.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/aberhrml/metabolighter/issues
repositorydatametabolomicsmassspectrometrydatametabolightsmetabolights-studiesopen-datarest-api
Last updated from:35896771fa. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 150 | ||
| source / vignettes | OK | 190 | ||
| linux-release-x86_64 | OK | 125 | ||
| macos-release-arm64 | OK | 100 | ||
| macos-oldrel-arm64 | OK | 90 | ||
| windows-devel | OK | 84 | ||
| windows-release | OK | 132 | ||
| windows-oldrel | OK | 79 | ||
| wasm-release | OK | 111 |
Exports:all_get_methodscreate.MAFdownload_study_fileget_isa_investigationget_private_studiesget_studiesget_study_assay_fileget_study_assay_listget_study_auditget_study_contactsget_study_descget_study_descriptorsget_study_factorsget_study_filesget_study_metaget_study_orgget_study_protocolsget_study_pubsget_study_samplesget_study_techget_study_titleget_user_studiesget_webservicemtbls_keyread.MAFsearch_metabolitewrite.MAF
Dependencies:askpassclicrayoncurldplyrgenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigpurrrR6rlangrvestselectrstringistringrsystibbletidyselectutf8vctrswithrxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| All Public GET Methods | all_get_methods |
| Create a dataframe representing a MAF file | create.MAF |
| Download Study File Contents | download_study_file |
| Get ISA Investigation File | get_isa_investigation |
| Get Private Studies | get_private_studies |
| Get Studies | get_studies |
| Get Study Assay File | get_study_assay_file |
| Get Study Description | get_study_assay_list |
| Get Study Audit | get_study_audit |
| Get Study Contacts | get_study_contacts |
| Get Study Description | get_study_desc |
| Get Study Descriptors | get_study_descriptors |
| Get Study Factors | get_study_factors |
| Get Study Files | get_study_files |
| Get Study Meta | get_study_meta |
| Get Study Organisms | get_study_org |
| Get Study Protocols | get_study_protocols |
| Get Study Publications | get_study_pubs |
| Get Study Samples | get_study_samples |
| Get Study Technology | get_study_tech |
| Get Study Title | get_study_title |
| Get Studies for User | get_user_studies |
| Get Web-service details | get_webservice |
| Set API Token | mtbls_key |
| Read MAF file to dataframe | read.MAF |
| Search Metabolite | search_metabolite |
| Write a dataframe to a MAF file | write.MAF |
