Package: sRm 0.2.6

Tom Wilson

sRm: Toolkit for SRM-MS data (MS) data

A complete toolkit for working with Selective Reaction Monitoring (SRM) Mass Spectrometry (MS) data and other variants of targeted Liquid Chromatography (LC) MS data.

Authors:Tom Wilson [aut, cre]

sRm_0.2.6.tar.gz
sRm_0.2.6.zip(r-4.7)sRm_0.2.6.zip(r-4.6)sRm_0.2.6.zip(r-4.5)
sRm_0.2.6.tgz(r-4.6-any)sRm_0.2.6.tgz(r-4.5-any)
sRm_0.2.6.tar.gz(r-4.7-any)sRm_0.2.6.tar.gz(r-4.6-any)
sRm_0.2.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
sRm/json (API)
NEWS

# Install 'sRm' in R:
install.packages('sRm', repos = c('https://aberhrml.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/wilsontom/srm/issues

On CRAN:

Conda:

lcmsmass-spectrometrymetabolomicsquantificationsrm-mstriple-quadrupole

2.48 score 3 stars 9 scripts 27 exports 141 dependencies

Last updated from:d955518c52. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING222
source / vignettesERROR280
linux-release-x86_64WARNING175
macos-release-arm64WARNING139
macos-oldrel-arm64WARNING130
windows-develWARNING150
windows-releaseWARNING150
windows-oldrelWARNING178
wasm-releaseOK581

Exports:adjustBaselinecreateGroupdetectInstrumentModeldetectPeaksfileMetaDatafilterPeaksfreeScalesgroupPeaksgroupSummaryheaderindexRTkeepTransitionsmetaopenSRMpeakAsymmetrypeaksplotGroupplotParentplotPeakAreaplotSampleplotSRMreducePeaksremoveSampleremoveTransitionsshowsmoothChromtransitions

Dependencies:abindaffyaffyioAnnotationFilteraskpassbase64encBHBiobaseBiocBaseUtilsBiocGenericsbiocmakeBiocManagerBiocParallelbslibcachemcliclueclustercodetoolscpp11crayoncrosstalkcurldata.tableDBIDelayedArraydigestdir.expirydoParalleldplyrevaluatefarverfastmapfilelockfontawesomeforeachformatRfsfurrrfutile.loggerfutile.optionsfuturegenericsGenomicRangesggplot2globalsgluegtablehighrhmshtmltoolshtmlwidgetshttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalistenvmagrittrMALDIquantMASSMassSpecWaveletMatrixMatrixGenericsmatrixStatsmemoiseMetaboCoreUtilsmimeMsCoreUtilsMsExperimentMsFeaturesMSnbaseMultiAssayExperimentmzIDmzRncdf4opensslotelparallellypcaMethodspillarpkgconfigplotlyplyrpreprocessCoreprettyunitsprogresspromisesProtGenericsPSMatchPTModspurrrQFeaturesR6rappdirsRColorBrewerRcppreshape2Rhdf5librlangrmarkdownS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraySpectrastatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrsviridisLitevsnwithrxcmsxfunXMLxml2XVectoryaml

Readme and manuals

Help Manual

Help pageTopics
Adjust BaselineadjustBaseline adjustBaseline,SRM-method
Create GroupcreateGroup createGroup,SRM-method
Detect Instrument ModeldetectInstrumentModel
Detect PeaksdetectPeaks detectPeaks,SRM-method
Extract meta information from .mzML filefileMetaData
Filter PeaksfilterPeaks filterPeaks,SRM-method
Free ScalesfreeScales
Group PeaksgroupPeaks groupPeaks,SRM-method
Group SummarygroupSummary groupSummary,SRM-method
headerheader header,SRM-method
Find Target Retention Time (Rt) for a transitionindexRT indexRT,SRM-method
Keep TransitionskeepTransitions keepTransitions,SRM-method
metameta meta,SRM-method
Open SRM FilesopenSRM
Peak AsymmetrypeakAsymmetry peakAsymmetry,SRM-method
peakspeaks peaks,SRM-method
Plot GroupplotGroup plotGroup,SRM-method
Plot ParentplotParent plotParent,SRM-method
Plot Peak AreaplotPeakArea plotPeakArea,SRM-method
Plot SampleplotSample plotSample,SRM-method
Plot SRMplotSRM plotSRM,SRM-method
Reduce PeaksreducePeaks reducePeaks,SRM-method
Remove SampleremoveSample removeSample,SRM-method
Keep TransitionsremoveTransitions removeTransitions,SRM-method
show-SRMshow,SRM-method
Smooth ChromatogramssmoothChrom smoothChrom,SRM-method
SRMSRM-class
Accessor Methods for the SRM S4 classtransitions transitions,SRM-method